FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15173998
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1183500.011.314956120
CGCCGTA544150.08.225212120
TGGTCGC662000.08.138517120
GGTCGCC636350.07.995152120
GCCGTAT529400.07.899066120
CGTATCA443700.07.869741120
GTATCAT454500.07.801543120
GGTGGTC771300.07.7786384120
GTGGTCG714250.07.736353120
GCGTCGG85800.07.6918774120
TCGCCGT607350.07.636026120
CCGTATC507100.07.501059120
GTCGCCG629050.07.4870615120
TCGGTGG891800.07.4070754120
CTCGGTG941450.07.182135120
TCATTAA401650.06.975832120
CGGTGGT853650.06.915796120
TCTCGGT986350.06.763865118-119
GATCTCG1106650.06.7280374120
ATCTCGG1050450.06.688187120
Produced by FastQC (version 0.11.5)