FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11393508
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC119700.068.0563120
GAGCACA190850.043.145775120
AGAGCAC244700.033.579517118-119
AAGAGCA387650.021.336344118-119
GAAGAGC422350.020.28219120
GGAAGAG511150.016.30035118-119
TCGGAAG586350.015.025095120
CGGAAGA590050.014.458964118-119
GATCGGA697550.012.647745118-119
ATCGGAA697450.012.61226120
AGATCGG776100.011.215531116-117
CACACGT33850.010.89303118-119
TAGATCG171350.010.483491112-113
CACGTCT40500.010.199329120
CTAGATC43650.09.687263110-111
ACACGTC40850.09.448865120
CCTAGAT18000.09.40512120
AAGATCG295350.09.033501120
GAGATCG324050.08.873698116-117
TTAGATC75600.08.770656114-115
Produced by FastQC (version 0.11.5)