FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11341410
Sequences flagged as poor quality0
Sequence length57-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA737350.011.301178120
GCGTCGG85050.09.522579120
TGGTCGC499650.09.35334120
CGTATCA307050.09.319753120
GGTCGCC478500.09.290337120
CGCCGTA395200.08.986693120
GTGGTCG546100.08.975218120
GGTGGTC589850.08.940101120
TCATTAA251750.08.817133120
GCCGTAT380550.08.528658120
TCGCCGT465800.08.320094120
TCTCGGT794400.08.193805120
CGGTGGT659150.08.164007120
CTCGGTG745550.08.143271120
GTATCAT315550.08.023048120
CATTAAA252250.07.991039120
GATCTCG923650.07.911066120
GTCGCCG500300.07.842281120
TCGGTGG696850.07.8256383120
ATCATTA288100.07.725486120
Produced by FastQC (version 0.11.5)