FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14611786
Sequences flagged as poor quality0
Sequence length53-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA858850.011.693942120
GCGTCGG130150.010.187576120
CGTATCA426400.010.15881120
GCCGTAT552400.010.002965120
GTATCAT427950.09.841626120
CCGTATC499050.09.7619095120
CGCCGTA620250.09.547137120
TCATTAA347250.09.433508120
GGTCGCC760250.09.248983120
ATCATTA399000.09.217442120
TGGTCGC791650.08.912446120
CATTAAA352500.08.7483635120
GGTGGTC933550.08.650283120
GTCGCCG771950.08.611394120
GTGGTCG855450.08.5843935120
TCGCCGT722150.08.233207120
CTCGGTG1170750.08.107092120
TCGGTGG1079250.08.088421120
TATCATT469900.08.082042120
TCTCGGT1216400.07.9902697120
Produced by FastQC (version 0.11.5)