FastQCFastQC Report
Thu 16 May 2024
EGAF00004834121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004834121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38113574
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2028200.532146368640212No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1173140.30780109994407767No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT686200.1800408431914572No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)