FastQCFastQC Report
Wed 15 May 2024
EGAF00004834123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004834123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37773291
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2316020.6131369384785668No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT994590.26330509565608146No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT729040.19300409911331265No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)