FastQCFastQC Report
Mon 6 May 2024
EGAF00004834139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004834139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39582005
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1643690.41526193531631356No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT837240.21152036133591517No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT641270.16201048936252724No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)