FastQCFastQC Report
Wed 15 May 2024
EGAF00004834141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004834141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44871689
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1824590.4066238736856997No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT886080.1974697230585637No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT719730.1603973498746615No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)