FastQCFastQC Report
Thu 16 May 2024
EGAF00004834151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004834151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37411822
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT999640.26719896186825653No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT517580.13834664347542336No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT397670.10629527746603734No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)