FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004835796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004835796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50
Sequences flagged as poor quality0
Sequence length35-251
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC612.0No Hit
CCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGAT510.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT48.0No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT36.0No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCCTGAA24.0No Hit
CCTACGGGTGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC24.0No Hit
CCTACGGGCGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC24.0No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT24.0No Hit
CCTACGGGTTGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC24.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT24.0No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT24.0No Hit
CCTACGGGGGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGAT12.0No Hit
CCTACGGGGGGCTGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGAT12.0No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT12.0No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT12.0No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN12.0No Hit
CCTACGGGCGGCAGCAGTAGGGAATCTTCCTCAATGGACGAAATCCTGAC12.0No Hit
CCTACGGGTGGCAGCAGTGGGGGATATTGCTCAATGGGGGCGACTCTGAC12.0No Hit
CCTACTGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT12.0No Hit
CCTACGGGCGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGCCTGAC12.0No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT12.0No Hit
CCTACGGGAGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGGACAATGGGGGCAACCCTGAT12.0No Hit
CCTACGGGTGGCAGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCTCAATGGAGGAAACTCTGAT12.0No Hit
CCGACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGAGGCAGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC12.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)