FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004835816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004835816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length249-251
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGTGGCTGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGAT48.695652173913043No Hit
CCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGAT36.521739130434782No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT36.521739130434782No Hit
CCTACGGGTGGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGAT36.521739130434782No Hit
CCTACGGGAGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC36.521739130434782No Hit
CCTACGGGCGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAA36.521739130434782No Hit
CCTACGGGGGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC36.521739130434782No Hit
CCTACGGGTGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGAT24.3478260869565215No Hit
CCTACGGGTGGCAGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC24.3478260869565215No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT24.3478260869565215No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT24.3478260869565215No Hit
CCTATGGGCGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACG24.3478260869565215No Hit
CCTAGGGGGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACG12.1739130434782608No Hit
CCTACGGGTGGCTGCAGTAAGGAATATTGGTCAATGAGCGAAAGCCTGAA12.1739130434782608No Hit
CCTACGGGTGGCTGCAGTGGGGAATTTTGGACAATGGGGGAAACCCTGAT12.1739130434782608No Hit
CCTACGGGTGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.1739130434782608No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT12.1739130434782608No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT12.1739130434782608No Hit
CCTACGGGGGGCAGCAGTAGGGAATCTTCCACAATGGGCGAAAGCCTGAT12.1739130434782608No Hit
CCTACGGGGGGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGAT12.1739130434782608No Hit
CCTACGGGTAGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT12.1739130434782608No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT12.1739130434782608No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGCAACCCTGAT12.1739130434782608No Hit
CCTACGGGTGGCAGCAGTAGGGAATCTTCCACAATGGGCGAAAGCCTGAT12.1739130434782608No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT12.1739130434782608No Hit
CCTCCGGGTGGCAGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)