FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004835818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004835818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50
Sequences flagged as poor quality0
Sequence length249-251
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGTGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC612.0No Hit
CCTACGGGAGGCTGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC510.0No Hit
CCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC48.0No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGGACAATGGGGGGAACCCTGAT48.0No Hit
CCTACGGGGGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC36.0No Hit
CCTACGGGAGGCTGCAGCAAGGAATTTTCCGCAATGGGCGCAAGCCTGAC36.0No Hit
CCTACGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGAT24.0No Hit
CCTACGGGTGGCTGTAGTGGGGAATTTTGGACAATGGGGGCAACCCTGAT24.0No Hit
CCTACGGGCGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGAT24.0No Hit
CCTACGGGAGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC24.0No Hit
CCTACGGGTGGCTGCAGTAGGGAATCATCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGAAGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGAT12.0No Hit
CCTACGGGTGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGTGGCTGCAGCAAGGAATTTTCCGCAATGGGCGCAAGCCTGAC12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATTTTGCACAATGGGGGAAACCCTGAT12.0No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACATTGGGCGGAAGCCTGAT12.0No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT12.0No Hit
CCTACGGGAGGCTGCTACACAATGTTTCCATTTAGTCGGGAGGGGAAATG12.0No Hit
CCTACGGGCGGCTGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT12.0No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGACGAGAGCCTGAT12.0No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGAT12.0No Hit
CCTACGGGCGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGAC12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGAT12.0No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT12.0No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT12.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)