FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004835823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004835823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52
Sequences flagged as poor quality0
Sequence length248-251
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG47.6923076923076925No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG35.769230769230769No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG35.769230769230769No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG23.8461538461538463No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTACCCACGCTTTCGAACCTCAG23.8461538461538463No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAA23.8461538461538463No Hit
GACTACAAGGGTATCTAATCCTGTTTGATACCCACACTTTCGAGCATCAG23.8461538461538463No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAA23.8461538461538463No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG23.8461538461538463No Hit
GCCTACACTTGTCTCTGCTCGTTCCTGATTTGCGCTATGCCGACTCTGTT11.9230769230769231No Hit
GACTACTAGGGTATCTAATCCTGTTTGATACCCAAACTATCGAGCATCCG11.9230769230769231No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACACTTTCGAGCCTCAA11.9230769230769231No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAA11.9230769230769231No Hit
GACTACTGGGGTATCTAATCCCGGTTTGTCCCCTCGCTTTTCTGCGTCAA11.9230769230769231No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTACCCATGCTTTCGAGCCTCAG11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTTGATACCCACACTTTCGCGCCTCAA11.9230769230769231No Hit
AACTACCCATGTATCTAATCCCGTCCATCATCGTGCTTAGATACCGATTT11.9230769230769231No Hit
GACTACCCGGGTATCTAATCCTGTTCGATCCCCACGCCTTCGCGCCTCAG11.9230769230769231No Hit
GACTACCCGGGTATCTAATCCTGTTCGCTACCCACACTTTCGAGCCTCGA11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCATGAG11.9230769230769231No Hit
GACTACCGGGGTATCTAATCCTGGTTGCTCCCCACGCTTTCGCGCCTCAA11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTTGATCCCCACGCTTTCGCGCCTCAG11.9230769230769231No Hit
GACTACCGGGGTATCTAATCCTGTTTGATACCCACACTTTCGAGCATCAA11.9230769230769231No Hit
GACTACTCGGGTATCTAATCCTGTTTGATACCCACACTTTCGAGCATCAG11.9230769230769231No Hit
GACTACACGGGTATCTAATCCTGTTCGATACCCACGCTTTCGAGCCTCAG11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAA11.9230769230769231No Hit
GACTACAAGGGTATCTAATCCTGTTCGATACCCACGCTTTCGTGCTTCAG11.9230769230769231No Hit
GACTACTGGGGTATCTAATCCTGTTCGATACCCACGCTTTCGTGCTTCAG11.9230769230769231No Hit
GACTACTAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG11.9230769230769231No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTCAG11.9230769230769231No Hit
GACTACCCGGGTATCTAATCCTGTTTGATCCCCACACTTTCGAGCCTCAG11.9230769230769231No Hit
GACTACCCGGGTATCTAATCCTGTTCGATACCCGCACCTTCGAGCCTCAG11.9230769230769231No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAA11.9230769230769231No Hit
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTCAG11.9230769230769231No Hit
GACTACCGGGGTATCTAAGCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG11.9230769230769231No Hit
GACTACCAGGGTATCTAATCCTGTTCGCTACCCACGCTTTCGAGCCTCAG11.9230769230769231No Hit
GACTACAAGGGTATCTAATCCTGTTCTCTCCCCACGCTTTCGAGCGTCAG11.9230769230769231No Hit
GACTACAAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGAGCATCAG11.9230769230769231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)