FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351724
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC16574747.12416553888845No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT15876745.13965495672743No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG17240.490157054963551No Hit
CTCTTGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT9950.28289226780088933No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC7500.21323537773936382No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA5840.16603928079971797No Hit
TTTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAG3840.10917651340255428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)