FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004838134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351724
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT16071645.693782625012794No Hit
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC15958745.3727923030558No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG14160.40258839317191886No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCATTCTTAGTGCAGGT9930.2823236401269177No Hit
CGTCGTGCTCATACACTTCATGTGTACTTTTATGAATTTCAACATAGAAC6060.17229418521340598No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC5080.14443142918879576No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA4830.1373235832641503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)