FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351272
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT16327346.4805051356214No Hit
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC16245746.24820651802592No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG13760.3917192375139493No Hit
ATCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT3740.10647019973126239No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC3570.10163064519802319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)