FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004838138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399756
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC18783746.98791262670229No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT18753046.91111578062618No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG8760.21913367153963917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)