FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253876
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC12032847.39636673021475No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT11811346.52389355433361No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG15970.6290472514140761No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC3940.155193874174794No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA3700.14574044021490806No Hit
TTTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAG2980.1173801383352503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)