FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253876
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC11850146.67672407001843No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT11714746.143392837448204No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG11410.4494320061762435No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC3180.12525799996848858No Hit
ATCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT2930.1154106729269407No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA2820.11107784902865966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)