FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315183
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC14895047.25825948734544No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT14746246.78615280646481No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG9700.30775771535901364No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA6800.21574767674652504No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC5610.17799183331588317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)