FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004838160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357966
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT16570346.29015046121699No Hit
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC16551646.237910863042856No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG14120.3944508696356637No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC4390.12263734544621556No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA4250.11872635948665516No Hit
ATCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT3630.10140627880860194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)