FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences308767
Sequences flagged as poor quality0
Sequence length300
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAG14439746.76568415666182No Hit
TGAGACCATGGACTGACGACATGTGTACTCACGCTTACAGCTCCAGCTGA13962445.21985833978372No Hit
TTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGA19510.6318680428931849No Hit
GAGACCATGGACTGACGACATGTGTACTCACGCTTACAGCTCCAGCTGAT10090.326783626488582No Hit
TGAGAACATGGACTGACGACATGTGTACTCACGCTTACAGCTCCAGCTGA9090.294396745766225No Hit
TCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGAA4160.13472942380500508No Hit
CAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGAAA4020.1301952605038751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)