FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263898
Sequences flagged as poor quality0
Sequence length300
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAG12476647.27811502929163No Hit
TGAGACCATGGACTGACGACATGTGTACTCACGCTTACAGCTCCAGCTGA12296846.59679118447279No Hit
TTCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGA12640.4789729365133498No Hit
GAGACCATGGACTGACGACATGTGTACTCACGCTTACAGCTCCAGCTGAT8110.30731570531038505No Hit
TCAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGAA3760.14247929124131292No Hit
CAGGTAGTTCATAATGCAATCATAATAGAGATGACTAATTTAGGAAGAAA3500.1326269998256902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)