FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004838167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345174
Sequences flagged as poor quality0
Sequence length300
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAAC16439447.626414503989295No Hit
CTCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGT16054646.51161443214147No Hit
CTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTCG15930.46150637069999484No Hit
TCTGGGTAGTCACCAACGGTATGTGTGTTATCTCCTTCTTAGTGCAGGTC6040.17498421086176827No Hit
GTCGTGCTCATACACTTCCTGTGTACTTTTATGAATTTCAACATAGAACA4370.12660281481223962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)