FastQCFastQC Report
Wed 15 May 2024
EGAF00004838244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35601250
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC760370.21357957936870195No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA383590.10774621677609635No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA365060.10254134335170816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)