FastQCFastQC Report
Sat 11 Mar 2023
EGAF00004838351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157469428
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA42286502.685378396116356Illumina Paired End PCR Primer 2 (97% over 39bp)
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3362800.2135525633585206Clontech SMART CDS Primer II A (100% over 26bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)