EGAF00004838446 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004838446
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8416552
Sequences flagged as poor quality	0
Sequence length	65
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT	30028	0.3567731774246746	No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGAGCCCTAAGCTCCCC	13865	0.16473491757669886	No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAG	12061	0.14330096219924737	No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCC	11568	0.13744345665540947	No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTC	11521	0.13688503320599693	No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATAT	8913	0.10589847243859482	No Hit
CTGCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTGTAGGAATATGCAGGCG	8780	0.1043182528902572	No Hit
GCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTGTAGGAATATGCAGGCGCA	8524	0.10127662729345699	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGATT	310	26.641537	25
GCCCTAA	4000	26.477211	52
CCCTAAG	4170	25.538689	53
CCTAAGC	4160	25.45825	54
GCCGGCT	8580	24.21869	1
CTAAGCT	4660	22.852339	55
CCGGCTT	9885	22.796288	2
GTTCCTA	1540	22.791542	15
TAAGCTC	4660	22.78958	56
TCACGCT	9725	22.716408	8
TTCACGC	9900	22.344646	7
GCCCTAT	2305	21.885305	53
GCCTACG	540	21.301897	10
CACGCTC	10545	21.005877	9
CTACACG	10380	20.747135	57
AGCCCTA	6090	20.733593	51
ACGCTCA	10765	20.713583	10
CGCGTAA	315	20.673449	1
CGGCTTC	11330	20.487656	3
TACACGT	10690	20.062815	58