FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004838449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14510677
Sequences flagged as poor quality0
Sequence length65
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT336210.2316983556315119No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA278950.19223775706674473No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATAAACAATGCACTAAA257620.1775382361553496No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGAGCCCTAAGCTCCCC201350.13875989383541512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)