EGAF00004838456 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004838456
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20312271
Sequences flagged as poor quality	0
Sequence length	65
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1306752	6.433313143567256	No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT	65588	0.32289840953776167	No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATAAACAATGCACTAAA	40025	0.19704837533922231	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26450	0.13021685266014815	No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTCTCCAGCAACTGGAAG	26112	0.12855283390025665	No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTC	25630	0.12617988407106226	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	24522	0.12072505334337061	No Hit
CTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAATCTCCCACCTGTCTAA	21753	0.10709289965656721	No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTTGCATTTCCCATAATT	21492	0.10580796209345572	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTCGACG	2330	36.076015	6
GTTCGAC	2690	30.80943	5
CGACGAG	2710	29.058323	8
GTTCCTA	7840	26.672653	15
CATGCCC	7880	25.900517	7
AGTTCGA	3305	25.701036	4
AACGACG	1515	25.697882	16
GACCGCG	4995	25.035713	5
AGTTACC	8210	24.72202	34
GCCCTGT	8430	24.56055	10
CAGTTCG	3715	24.293621	3
ACCGCGT	5290	24.029858	6
CGACGGT	1635	23.99296	18
ATGCCCT	8570	23.952839	8
GTATAGA	5430	23.900917	22
ATGACGG	4705	23.883688	16
GCACTAA	13675	23.01696	58
AGACCGC	5460	23.01159	4
GACGAGG	4045	22.967863	9
CGGTATA	5255	22.7888	20