FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004838458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9400983
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3776104.016707614512227No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTT214150.22779532736097916No Hit
CTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTTCAGGTTTAAATTTATCTTTTTTCTTCTAAAA115890.12327434269373745No Hit
CCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTTCAGGTTTAAATTTATCTTTTTTCTTCTAAA114950.12227444725727087No Hit
GTCACCTTCATTTTAATCTAAAAGCATTGCCCTTCTATTGGTATTAATTCGGGGCTCTGTAGTCC99110.10542514543425936No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTC94390.10040439388093778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)