FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19342292
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA100550.09.44237494
ATCGGAA92200.07.74862494
GCGTCGT46400.07.59722994
AGATCGG117050.07.187499592-93
TAGATCG33400.06.895432594
AGCGTCG55000.06.40929894
TCGTGTA32250.06.266869594
TCGGAAG129850.05.393320694
AAGATCG52100.05.32262994
GAGATCG82600.05.06432894
CGTCGTG51500.05.0195894
Produced by FastQC (version 0.11.5)