FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22124743
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA90250.08.020370594
GATCGGA92050.07.60822694
AGATCGG117000.07.432018394
TAGATCG33200.06.22924694
GCGTCGT49850.06.128710794
AGCGTCG58650.05.529705594
TCGTGTA35550.05.420822694
AGAGCGT85250.05.40321994
CGTCGTG55750.05.31149394
GTCGTGT48000.05.189859494
Produced by FastQC (version 0.11.5)