FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14975998
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA139550.08.2176894
TAGATCG44700.07.885749394
ATCGGAA130900.07.75538594
AGATCGG158250.06.934729692-93
TCGGAAG155400.06.35122594
ACACGTC62200.06.347141394
CGGAAGA157650.05.843208394
GAGATCG82700.05.796741594
CACACGT83900.05.321706394
ACGTCTG62450.05.192851594
AAGATCG57450.05.113006692-93
CACGTCT70350.05.07736994
Produced by FastQC (version 0.11.5)