FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19740696
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA101050.08.41901894
TCGTGTA36050.08.34437794
AGATCGG128300.08.24280594
GATCGGA106350.07.955256594
TAGATCG37100.07.22137994
GCGTCGT49400.06.660245494
AGCGTCG57550.05.96206594
CGTCGTG50050.05.540731494
GTCGTGT47650.05.37570892-93
AAGAGCG106350.05.215112794
TCGGAAG137050.05.110064594
AAGATCG58950.05.102879594
AGAGCGT85100.05.026098394
Produced by FastQC (version 0.11.5)