FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20659554
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA91700.08.8158894
TAGATCG33300.08.46863894
ATCGGAA87350.07.74829594
AGATCGG113800.06.814723594
TCGTGTA33900.06.239063394
GCGTCGT45300.05.81027194
TCGGAAG132600.05.175065594
AAGATCG53600.05.17361194
AGCGTCG55750.05.058397394
Produced by FastQC (version 0.11.5)