FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9691018
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGTGT104550.09.17094894
CGTCGTG123900.09.02846194
CGTGTAG93850.08.81427394
AGCGTCG149200.08.56856794
TCGTGTA92250.08.35575294
GCGTCGT133650.08.26431894
GAGTGTA38000.07.42122894
AGAGCGT185650.07.265994594
GTGTAGG103300.07.1889494
TAGGGAA84800.07.14993394
ATCGGAA276300.07.11055594
TAGATCG80150.07.09561494
GATCGGA298200.07.07696194
CGGAAGA267950.07.06902394
TCGGAAG278600.06.900019694
GAGCGTC178850.06.687905392-93
GTAGGGA89600.06.58304892-93
AGATCGG327000.06.525536594
AAGAGCG207900.06.284900794
AGTGTAG37000.06.22447194
Produced by FastQC (version 0.11.5)