FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18971467
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA87900.08.66250194
TAGATCG29850.08.66035294
ATCGGAA84750.08.31895494
AGATCGG106750.07.132870794
TCGTGTA29900.06.445102794
GCGTCGT41400.06.017175794
CGTCGTG49300.06.00635394
AGCGTCG50800.05.458904794
AGAGCGT78650.05.318736694
TCGGAAG116800.05.03001192-93
Produced by FastQC (version 0.11.5)