FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19625043
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG114600.07.75169394
GATCGGA93800.07.516363694
ATCGGAA88950.07.45062294
GTCGTGT43400.07.0395294
TCGTGTA33000.06.551840394
GCGTCGT45400.06.36679692-93
AGCGTCG53750.06.296126494
TAGATCG29900.05.81634294
TCGGAAG124900.05.795323494
CGTCGTG50200.05.430326592-93
Produced by FastQC (version 0.11.5)