FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20439921
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA265800.09.32030894
TAGGGAA198150.08.70655994
GAGTGTA82200.08.63534694
GTCGTGT302400.08.28552594
CGTCGTG351050.08.26210794
CGTGTAG263750.08.10976892-93
GTAGGGA222000.08.08881794
TGTAGGG284850.08.00387194
GCGTCGT373850.07.92168994
AGCGTCG410900.07.88238694
GTGTAGG278350.07.397032394
GAGCGTC495450.07.201393694
ATCGGAA756050.07.05699794
AAAGAGT166900.06.98505794
AAGAGCG565250.06.89427494
TAGATCG237000.06.84298294
AGATCGG888850.06.83824594
AGTGTAG83300.06.828337794
TCGGAAG756700.06.81486994
AGAGCGT502750.06.79785492-93
Produced by FastQC (version 0.11.5)