FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10175235
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG135300.08.92867394
AGCGTCG215500.08.83403994
TCGTGTA140300.08.67748294
CGTCGTG178450.08.666244594
GCGTCGT193450.08.55313994
GTCGTGT158300.08.34405194
GAGTGTA52950.07.63456194
GTGTAGG141250.07.48765294
TGTAGGG146500.07.315580494
GTAGGGA119850.07.255894
AAGAGCG298300.07.21711894
GAGCGTC251850.07.213894492-93
TCGGAAG401650.07.08042394
AGAGCGT261750.06.98577494
TAGGGAA115750.06.903661794
CGGAAGA385150.06.8955794
GATCGGA435950.06.836033394
ATCGGAA406950.06.791846894
AGTGTAG48200.06.534003394
AGATCGG474150.06.46373394
Produced by FastQC (version 0.11.5)