FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6624995
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTGTA38200.010.70520794
AGTGTAG35550.09.65211494
TCGTGTA137700.09.42137594
GTCGTGT156000.08.88866694
GTGTAGA41300.08.64973494
CGTCGTG180300.08.52493794
GTGTAGG132950.08.37913494
TAGGGAA93800.08.31864592-93
CGTGTAG135150.08.31229694
GCGTCGT195500.08.22277694
GTAGATC52600.08.22131494
GTAGGGA108300.08.02938794
TGTAGGG130900.07.89991194
AAAGAGT64400.07.809748694
AGAGCGT258750.07.702374594
AAGAGTG67600.07.5095994
AGCGTCG215550.07.3599292-93
TAGATCT23550.07.18553292-93
AAGAGCG287150.06.907848494
GAGCGTC244350.06.82896994
Produced by FastQC (version 0.11.5)