FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24673567
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA221200.07.88267694
AGATCGG254850.07.67173694
TAGATCG74800.07.53974592-93
ATCGGAA212000.07.38232794
TCGGAAG248150.05.890213594
ACACGTC104300.05.76780594
CGGAAGA252450.05.67818394
ACGTCTG101300.05.660246494
CGTCTGA87150.05.55462594
CACGTCT119200.05.204542694
CAGATCG118300.05.204409694
AAGATCG88550.05.201425694
Produced by FastQC (version 0.11.5)