FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6483321
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGTCG13700.051.866272145
CACACGG25650.033.356018145
GAGCACC52450.027.50978145
CGGAAGG16400.026.526926145
AAGAGCC72150.019.797459145
CTGAACG48700.015.484027145
GATCATG100400.014.949139145
GATCGGG18800.014.655657145
AACTCCC46750.014.268744145
AACGCCG3850.001603639913.183079145
CCGATCT8904.7111826E-1013.0349554
TCGCGGG12650.012.609902145
CTTCCGA9309.422365E-1012.4768121
CACGGCG6504.0349078E-612.270405145
CCGTCGT7109.982614E-912.254693145
CCAGTCC103600.012.03783145
ACACGTG16850.011.618321145
CGGCGTG18850.011.539566145
CGATCTA4400.00436469611.5351935
TTCCGGG9451.5948899E-811.509037145
Produced by FastQC (version 0.11.5)