FastQCFastQC Report
Wed 11 May 2022
EGAF00004838658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23412104
Sequences flagged as poor quality0
Sequence length125
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2170450.9270631977373754No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1455240.6215759164575726No Hit
CCGTAAATTACGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC584500.2496571858727434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)