FastQCFastQC Report
Thu 12 May 2022
EGAF00004838662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33468605
Sequences flagged as poor quality0
Sequence length125
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3040080.9083378288398934No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1841290.5501543909583325No Hit
CTGCACATTGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC610640.18245158410396847No Hit
CTGCACATTGGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC533690.15945988785609677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)