FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004838663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33468605
Sequences flagged as poor quality0
Sequence length125
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2687490.8029883528160195No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1792750.5356512468924235No Hit
CTGCACATTGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC543940.16252245948105695No Hit
CTGCACATTGGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC531770.15888621590293353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)