FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8505336
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGTCG16400.028.737757145
CGTAATG76600.020.162027145
CTGAACG32300.016.836123145
GAGCACC68050.016.834969145
ATGCCGG56100.016.80211145
TCTCGTT31850.016.163383145
CACACGG36450.016.112793145
CGTCTTG30150.014.429367145
GATCGGG14350.014.147819145
CGTACGG32450.014.076971145
ACACGTA38650.013.882432145
TGCCGTG39600.013.366296145
CGTCGTG15400.012.712366145
GTCTTCG22400.012.300391145
GCCGTCG34500.011.349011145
GTCGTCG9702.345223E-811.212511145
TCACCGG22650.010.884139145
AAGAGCC84300.09.977316145
CGTAAGG27700.09.946887145
GTAATCG119600.09.760634145
Produced by FastQC (version 0.11.5)