FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3535005
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACGG11300.034.007446145
CACACGG15750.030.38365145
CCTTATG50800.025.263071145
CGTCTTG26950.025.020779145
TCTCGTT22850.024.750559145
CACGTCG14250.023.914406145
TGCCGTG30900.023.23022145
GTCTTCG14750.022.12061145
CTGAACG15500.021.985825145
GAGCACC34250.021.593159145
CGCGGAG4654.5019988E-918.71134145
GTCGTCG9450.018.414335145
GTGGCCG35950.017.950134145
ACACGTA20150.017.272005145
CGACGCT2159.216819E-916.8617253
ATGCCGG54250.015.637334145
ACGACGC2353.2887328E-915.4269032
CGTCGTG12850.015.2348175145
GACGCTC4301.418353E-515.1755524
GATCGGG7809.1495167E-1013.943547145
Produced by FastQC (version 0.11.5)