FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69956355
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGGA429450.018.4079365
GGCACGT232950.018.2977221
CCCGGAA184700.018.2274061
AAGAGCC190850.018.1488977
CTGGCAG257550.018.019981
TTAGGAG370100.018.0044656
CACGTTA382750.017.9332662
ACGTTAG479750.017.9182993
TAAGAGC187250.017.7694346
CCACGTT464900.017.6695021
AGGGAAG150700.017.4594553
GCCCGAA129550.017.449191
GTAAGAG206400.017.218585
TGATAGC189800.017.1655964
TAGGAGT392300.017.145417
AATGCGG147900.017.0904110
AGAAGGG152550.017.0741568
ATACCGA159550.017.0653481
CGTTAGG458750.016.862994
GATAGCA269450.016.83495
Produced by FastQC (version 0.11.5)