FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58266158
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGGA353400.018.3665895
GGCACGT198950.018.3602751
CCCGGAA151550.018.322181
TAAGAGC155550.018.2722476
AAGAGCC160100.018.2613437
CTGGCAG211600.017.9960121
ACGTTAG392400.017.9459383
TTAGGAG306300.017.8403786
CACGTTA315450.017.8238332
AGGGAAG127100.017.6202373
AATGCGG118650.017.37288910
CCACGTT383800.017.3658771
GTAAGAG176000.017.3365735
TAGGAGT317600.017.3060477
AGAAGGG132750.017.2593258
TACGCGG100100.017.09801510
GCCCGAA107750.016.9757751
ATACCGA138750.016.9586221
CGTTAGG373950.016.9572414
GATAGCA219900.016.9467965
Produced by FastQC (version 0.11.5)